Computational Methods for Paleogenomics and Comparative Genomics


Cedric Chauve

Professor, Department of Mathematics, SFU.

Email: cedric.chauve [at] sfu.ca.



Current members



Aniket Mane.

PhD student, Department of Mathematics, SFU (co-supervisd with Mahsa Faizrahnemoon).


Fatih Karaoglanoglu.

PhD student, Computer Science, SFU (co-supervised with Faraz Hach).


Andras Rempel

Visiting PhD student, University of Bielefeld, supervised by Jens Stoye.


Rene Roy

MSc student, Mathematics, SFU (co-supervised with Mahsa Faizrahnemoon).


Piyush Aggarwal.

MSc student, Department of Mathematics, SFU (co-supervised with Caroline Colijn).


MohammadReza Sadeghian.

MSc student, Department of Mathematics, SFU (co-supervised with Mahsa Faizrahnemoon).


Pegah Aryadoost.

BSc student, School of Computing Science, SFU (co-supervised with Mahsa Faizrahnemoon).

Alumni



Pedro Feijao.

Post-Doctoral Fellow, SFU, (co-supervised with Leonid Chindelevitch).

Currently at Imagia Canexia Health.


Stepan Grynek

Post-Doctoral Fellow, BC Cancer Agency, (co-supervised with Sara Mostafavi and Ryan Brinkman).


Julien Courtiel

PIMS-CNRS Postdoctoral fellow, PIMS (co-supervised with Marni Mishna and Yann Ponty).

Currently Assistant Professor in Caen University.


Aïda Ouangraoua.

Postdoctoral fellow, SFU.

Currently Canada Research Chair at University of Sherbrooke.


Baraa Orabi.

PhD student, Computer Science, UBC (co-supervised with Faraz Hach).


Alice Yue.

PhD student, Computer Science at SFU (co-supervised with Ryan Brinkman).

Thesis.

Currently at Metafora Biosystems.


Ehsan Haghshenas.

PhD student, Computer Science, SFU (co-supervised with Cenk Sahinalp and Faraz Hach).

Thesis.

Currently at Boreal Genomics.


Nina Luhmann.

PhD student, Bielefeld University (co-supervised with Jens Stoye and Roland Wittler).

Thesis.

Currently Mainz University.


Ashok Rajaraman.

PhD student, Department of Mathematics, SFU.

Thesis.

Currently at Accenture.



Janik Sielemann.

Visiting PhD student, Mathematics at SFU and Bioinformatics at Bielefeld University.


Katharina Sielemann.

Visiting PhD student, Mathematics at SFU and Bioinformatics at Bielefeld University.


Robert Mueller.

Visiting PhD student, Mathematics at SFU and Bioinformatics at Bielefeld University.


Markus Lux

Visiting PhD student, Bielefeld University (co-supervised in Vancouver with Ryan Brinkman).


Yoann Anselmetti.

Visiting PhD student, University of Montpellier.

Currently Post-Doctoral fellow in CoBius, Unversity of Sherbrooke.


Joao Paulo Pereira Zanetti.

Visiting PhD student, University of Campinas.


Daniel Doerr.

Visiting PhD student, University of Bielefeld (January-April 2014).

Currently Post-Doctoral Fellow at Institute f. Med. Biometry and Bioinformatics, University Hospital Düsseldorf.



Stanley Gan.

MSc student, Computer Science at SFU (co-supervised with Leonid Chindelevitch).

Thesis.

Currently at Amazon.


Fang Zhang.

MSc student, Computer Science at SFU (co-supervised with Leonid Chindelevitch).

Thesis.

Currently at AmGen.


Akbar Rafiey.

MSc student, Department of Mathematics, SFU (co-supervised with Jan Manuch and Ladislav Stacho).

Thesis.

Currently PhD student in Computer Science at SFU.


France Paquet-Nadeau.

MSc student, Department of Mathematics, SFU (co-supervised with Marni Mishna).

Currently at UbiSoft.


Bradley Jones

MSc student, Department of Mathematics, SFU (co-supervised with Karen Yeats).

Thesis.

Currently a Michael Smith Foundation for Health Research Post-Doctoral Fellow at SFU.

Aniket Mane.

MSc student, Department of Mathematics, SFU.

Thesis.

Currently PhD student in Mathematics (Operation research) at SFU.


Alice Yue.

MSc student, Computer Science at SFU (co-supervised with Ryan Brinkman).

Thesis.

Currently at Metafora Biosystems.


Ashok Rajaraman.

MSc student, Department of Mathematics, SFU.

Thesis.

Currently at Accenture.



Ghofrane Farhat.

BSc student, Ecole Nationale de Sciences de l'Informatique, Tunisia (co-supervised with Mahsa Faizrahnemoon).


Evan Cribbie.

BSc student, Department of Mathematics, SFU.


Rene Roy.

BSc student, Department of Combinatorics and Optimization, University of Waterloo.


Etienne Lasalle.

Visiting MSc intern, ENS Cachan, co-supervised with Leonid Chindelevitch.

Currently PhD students at Paris-Saclay.


Hua-Ting Yao.

Visiting MSc intern, Ecole Polytechnique, co-supervised with Leonid Chindelevitch.

Currently Post-Doctoral Fellow at University of Vienna.


Hugo Menet

Visiting MSc intern, ENS Lyon.

Most recently PhD student at University of Lyon.


Beryl Zhuang

MSc intern, Department of Mathematics, SFU (co-supervised with Will Hsiao).



Mark Forteza.

Honours BSc and NSERC USRA, SFU, Mathematics.

Currently Junior accountant.


Sean La

Undergraduate intern, NSERC USRA, SFU.

Currently graduate student at UBC.


Jonathan Mendes de Almeida.

MITACS Globalink intern.


Koen van Greevenbroek

BSc intern, Department of Mathematics, SFU.


Jake Turner

Undergraduate intern (NSERC USRA, summer 2014), Department of Mathematics, SFU (co-supervised with Tamon Stephen).


Other Alumni: follow this link.